Commit 911127be authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Change 5GEXSE to 5GEXR2

parent 38909e89
Pipeline #8395 passed with stages
in 15 minutes and 59 seconds
...@@ -145,7 +145,7 @@ workflow_parameters: ...@@ -145,7 +145,7 @@ workflow_parameters:
- ['3GEXv2', '3prime GEX v2 (3prime Gene Expression)'] - ['3GEXv2', '3prime GEX v2 (3prime Gene Expression)']
- ['5GEX', '5prime GEX Auto (5prime Gene Expression)'] - ['5GEX', '5prime GEX Auto (5prime Gene Expression)']
- ['5GEXPE', '5prime GEX both R1 and R2 used for alignment (5prime Gene Expression)'] - ['5GEXPE', '5prime GEX both R1 and R2 used for alignment (5prime Gene Expression)']
- ['5GEXSE', '5prime GEX only R2 used for alignment (5prime Gene Expression)'] - ['5GEXR2', '5prime GEX only R2 used for alignment (5prime Gene Expression)']
required: true required: true
description: | description: |
10x single cell gene expression chemistry version (only used in cellranger version 3.x). 10x single cell gene expression chemistry version (only used in cellranger version 3.x).
......
...@@ -56,7 +56,7 @@ if (params.astrocyte) { ...@@ -56,7 +56,7 @@ if (params.astrocyte) {
params.chemistryParam ='fiveprime' params.chemistryParam ='fiveprime'
} else if (params.kitVersion == "5GEXPE") { } else if (params.kitVersion == "5GEXPE") {
params.chemistryParam ='SC5P-PE' params.chemistryParam ='SC5P-PE'
} else if (params.kitVersion == "5GEXSE") { } else if (params.kitVersion == "5GEXR2") {
params.chemistryParam ='SC5P-R2' params.chemistryParam ='SC5P-R2'
} else { } else {
params.chemistryParam = 'auto' params.chemistryParam = 'auto'
......
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