diff --git a/.gitignore b/.gitignore
index de2a55ea0de1bbdcf4356d09b4d019e036d88eb6..5476422ef13e9df66e855db9e4d6bea34b1e3915 100644
--- a/.gitignore
+++ b/.gitignore
@@ -300,6 +300,9 @@ $RECYCLE.BIN/
 /workflow/.nextflow/*
 /workflow/work/*
 /workflow/output/*
+/.nextflow/*
+/work/*
+/output/*
 pipeline_trace*.txt*
 .nextflow*.log*
 report.html*