From 8a82e4743f5005f16ca5f55a8e1ecbcaa5cfa1d1 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sat, 27 Apr 2019 18:53:38 -0500
Subject: [PATCH] Update .gitlab-ci.yml
---
.gitlab-ci.yml | 32 ++++++++++++++++++++++++++++++--
1 file changed, 30 insertions(+), 2 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 7b3bafd..962c228 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -17,16 +17,28 @@ stages:
astrocyte_check:
stage: astrocyte
script:
- - astrocyte_cli check ../cellranger_count
+ - astrocyte_cli check ../cellranger_count
artifacts:
expire_in: 2 days
+ retry:
+ max: 2
+ when:
+ - always
run_hu.cr3v2ref3.0.0:
stage: simple
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'two' --version '3.0.2'
artifacts:
+ name: "$CI_JOB_NAME"
+ when: always
+ paths:
+ - binaries/
expire_in: 2 days
+ retry:
+ max: 2
+ when:
+ - always
run_mu.cr2v2ref1.2.0:
stage: detailed
@@ -35,7 +47,15 @@ run_mu.cr2v2ref1.2.0:
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v2s2r10k/design.csv" --genome 'mm10-1.2.0' --kitVersion 'auto' --version '2.1.1'
artifacts:
+ name: "$CI_JOB_NAME"
+ when: always
+ paths:
+ - binaries/
expire_in: 2 days
+ retry:
+ max: 2
+ when:
+ - always
run_hu.cr3v3ref3.0.0:
stage: detailed
@@ -44,4 +64,12 @@ run_hu.cr3v3ref3.0.0:
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
artifacts:
- expire_in: 2 days
\ No newline at end of file
+ name: "$CI_JOB_NAME"
+ when: always
+ paths:
+ - binaries/
+ expire_in: 2 days
+ retry:
+ max: 2
+ when:
+ - always
\ No newline at end of file
--
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