From 6772ee157e850f437d56a859238e3b037653b95d Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 14 Aug 2020 13:33:14 -0500
Subject: [PATCH] Add seurat test data link fix to container test
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 27d3b6d..ae855fa 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -252,7 +252,7 @@ container_seurat_test:
- master
- tags
script:
- - ln -s test-data/output/* .
+ - ln -sfn test_data/output/* .
- singularity run 'docker://bicf/seurat:2.0.0_indev' Rscript workflow/scripts/downstream_viz.r --sample sample1 --cellrangerVersion 4.0.0
- singularity run 'docker://bicf/seurat:2.0.0_indev' bash workflow/scripts/versions_seurat.sh > version_seurat.txt
artifacts:
--
GitLab