diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 27d3b6d26bca55ea7f1d00f34ea75b38e9496a65..ae855fac1101c0f73f495fb2451768a8337e848f 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -252,7 +252,7 @@ container_seurat_test: - master - tags script: - - ln -s test-data/output/* . + - ln -sfn test_data/output/* . - singularity run 'docker://bicf/seurat:2.0.0_indev' Rscript workflow/scripts/downstream_viz.r --sample sample1 --cellrangerVersion 4.0.0 - singularity run 'docker://bicf/seurat:2.0.0_indev' bash workflow/scripts/versions_seurat.sh > version_seurat.txt artifacts: