From 5f3b547d368be11691206b1429ad5bd807c0fdbd Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 7 Sep 2018 13:23:01 -0500
Subject: [PATCH] Fix debug output for genomes
---
workflow/main.nf | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 23f9f04..fac7a70 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -12,13 +12,17 @@ params.ref = params.genome ? params.genomes[ params.genome ].ref ?: false : fals
params.expectCells = 10000
params.forceCells = 0
+println params.genome
+println params.genomes[ params.genome ].ref
+println params.ref
+
// Check inputs
if( params.ref ){
refLocation = Channel
.fromPath(params.ref)
.ifEmpty { exit 1, "referene not found: ${params.ref}" }
} else {
- exit 1, "No reference genome specified. ${params.genome} ${params.ref} ${params.genomes[ ${params.genome} ].ref}"
+ exit 1, "No reference genome specified."
}
// Define List of Files
--
GitLab