diff --git a/workflow/main.nf b/workflow/main.nf index 23f9f04225a75474ac13f519ced5f38059b64c62..fac7a707ec8c741f63bd771267fd21022cf1787c 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -12,13 +12,17 @@ params.ref = params.genome ? params.genomes[ params.genome ].ref ?: false : fals params.expectCells = 10000 params.forceCells = 0 +println params.genome +println params.genomes[ params.genome ].ref +println params.ref + // Check inputs if( params.ref ){ refLocation = Channel .fromPath(params.ref) .ifEmpty { exit 1, "referene not found: ${params.ref}" } } else { - exit 1, "No reference genome specified. ${params.genome} ${params.ref} ${params.genomes[ ${params.genome} ].ref}" + exit 1, "No reference genome specified." } // Define List of Files