From 58df18145c59712c901a199a5c509554773355d2 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 7 Feb 2019 19:40:21 -0600
Subject: [PATCH] Fixes design file overwrite #6
---
workflow/main.nf | 2 +-
workflow/scripts/check_design.py | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index 7fef409..71cb08c 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -36,7 +36,7 @@ process checkDesignFile {
output:
- file("design.csv") into designPaths
+ file("design.checked.csv") into designPaths
script:
diff --git a/workflow/scripts/check_design.py b/workflow/scripts/check_design.py
index 6c0246a..f222177 100755
--- a/workflow/scripts/check_design.py
+++ b/workflow/scripts/check_design.py
@@ -100,7 +100,7 @@ def main():
new_design_df = check_design_headers(design_df)
check_files(design_df, fastq_df)
- new_design_df.to_csv('design.csv', header=True, sep=',', index=False)
+ new_design_df.to_csv('design.checked.csv', header=True, sep=',', index=False)
if __name__ == '__main__':
main()
--
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