diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml index 29f82cda5883ec0980adddbf909b90e81726d150..81b430f1b693a9f3f5a3c0ff9ec87f44b6a409ac 100755 --- a/astrocyte_pkg.yml +++ b/astrocyte_pkg.yml @@ -159,6 +159,17 @@ workflow_parameters: description: | 10x cellranger version. + - id: vizFiles + type: select + choices: + - [ 'true', 'Yes' ] + - [ 'false', 'No' ] + default: 'true' + required: true + description: | + Create objects which can be used for downstream visualization and analysis of each sample outputs. Currently created: Seurat R-objects. + + - id: astrocyte type: select choices: diff --git a/workflow/main.nf b/workflow/main.nf index 7af1756fa17ea992bf3ef0b03d87d15228fde720..1fb8fca096757974b9b7d1f285cf29fbecfdf2c5 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -81,6 +81,7 @@ expectCells = params.expectCells forceCells = params.forceCells chemistryParam = params.chemistryParam version = params.version +vizFiles = params.vizFiles outDir = params.outDir // Define script files @@ -397,6 +398,9 @@ process downstreamViz { file "*.rds" into seuratPaths file "version_seurat.txt" into version_seurat + when: + vizFiles + script: """ hostname