diff --git a/workflow/main.nf b/workflow/main.nf index 18d83246268260621a7dbfdb0018e32d57fc0ad7..f093e3c4a2ac5053a84ec725a77af3fde3da202a 100755 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -99,6 +99,7 @@ process trackStart { script: """ hostname + ulimit -u 16384 ulimit -a export https_proxy=\${http_proxy} @@ -134,6 +135,7 @@ process checkDesignFile { script: """ hostname + ulimit -u 16384 ulimit -a noSpaceDesign=\$(echo "${designLocation}" | tr -d ' ') if [[ "\${noSpaceDesign}" != "${designLocation}" ]]; then @@ -325,6 +327,7 @@ process count310 { */ process versions { tag "${name}" + module 'python/3.6.1-2-anaconda:pandoc/2.7' input: file versions_pythonScript @@ -357,6 +360,7 @@ metricsSummary = metricsSummary211.mix(metricsSummary302, metricsSummary310) process multiqc { tag "${name}" publishDir "${outDir}/${task.process}/${name}", mode: 'copy' + module 'multiqc/1.7' input: file ('*') from metricsSummary.collect() @@ -368,6 +372,7 @@ process multiqc { script: """ hostname + ulimit -u 16384 ulimit -a awk 'FNR==1 && NR!=1{next;}{print}' *.tsv > metrics_summary_mqc.tsv sed -i '1s/^.*\tE/Sample\tE/' metrics_summary_mqc.tsv