diff --git a/workflow/main.nf b/workflow/main.nf
index 3649ddfcc70460d5142e3c39cc3b803396c4fe25..7c3779884126d59efce2c59ef53e38c270a8a2ef 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -188,7 +188,7 @@ process count302 {
 
   input:
 
-  set sample, file("${sample}_S1_L00?_R1_001.fastq.gz"), file("${sample}_S1_L00?_R2_001.fastq.gz") from samples302
+  set sample, file("${sample}_S?_L001_R1_001.fastq.gz"), file("${sample}_S?_L001_R2_001.fastq.gz") from samples302
   file ref from refLocation302.first()
   expectCells302
   forceCells302
@@ -217,4 +217,4 @@ process count302 {
     cellranger count --id="$sample" --transcriptome="./$ref" --fastqs=. --sample="$sample" --force-cells=$forceCells302 --chemistry="$chemistryParam302"
     """
   }
-}
\ No newline at end of file
+}