diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 4b4402535fab56f0dd5dceff55cb098e4a966358..e7e7a07b8f13d737e841d098f775585ae8452035 100755 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -114,7 +114,7 @@ GRCh38-3.0.0: except: - tags script: - - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --ci true + - nextflow run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --ci true - pytest -m count310 artifacts: name: "$CI_JOB_NAME" @@ -138,7 +138,7 @@ mm10-3.0.0: except: - tags script: - - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --ci true + - nextflow run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0' --ci true - pytest -m count310 artifacts: name: "$CI_JOB_NAME" @@ -160,7 +160,7 @@ mm10-3.0.0: - master - tags script: - - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0' --ci true + - nextflow run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0' --ci true - pytest -m count310 artifacts: name: "$CI_JOB_NAME"