From 242716085623a7152d9972a19b110be663732a2c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 28 Jun 2019 12:00:55 -0500
Subject: [PATCH] Change multiqc order and fic config param
---
workflow/conf/multiqc_config.yaml | 6 ++++++
workflow/main.nf | 4 ++--
2 files changed, 8 insertions(+), 2 deletions(-)
diff --git a/workflow/conf/multiqc_config.yaml b/workflow/conf/multiqc_config.yaml
index 51b196d..52e7cec 100644
--- a/workflow/conf/multiqc_config.yaml
+++ b/workflow/conf/multiqc_config.yaml
@@ -54,3 +54,9 @@ table_columns_visible:
Reads Mapped Confidently to Exonic Regions: False
thousandsSep_format: ''
+
+report_section_order:
+ Software_Versions:
+ order: -1100
+ Software_References:
+ order: -1200
diff --git a/workflow/main.nf b/workflow/main.nf
index 44ae660..79895ef 100755
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -56,7 +56,7 @@ forceCells = params.forceCells
chemistryParam = params.chemistryParam
version = params.version
outDir = params.outDir
-multiqcConf = params.multiqc
+multiqcConf = params.multiqcConf
references = params.references
@@ -286,6 +286,6 @@ process multiqc {
ulimit -a
awk 'FNR==1 && NR!=1{next;}{print}' *.tsv > metrics_summary_mqc.tsv
sed -i '1s/^.*\tE/Sample\tE/' metrics_summary_mqc.tsv
- multiqc -c $multiqcConf
+ multiqc -c $multiqcConf .
"""
}
--
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