From 23af414c486206836f599bb7b2afdb06a61d3d81 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 12 Mar 2019 14:35:16 -0500
Subject: [PATCH] Change astrocyte param to be select
---
astrocyte_pkg.yml | 8 +++++---
workflow/conf/biohpc.config | 6 +++---
2 files changed, 8 insertions(+), 6 deletions(-)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 7c34bde..f33b7ed 100755
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -151,10 +151,12 @@ workflow_parameters:
10x cellranger version.
- id: astrocyte
- type: string
- required: true
+ type: select
default: 'true'
- regex: "true"
+ choices:
+ - [ 'true', 'true']
+ required: true
+ regex: 'true'
description: |
Ensure configuraton for astrocyte.
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 71409ac..e69f050 100755
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -9,15 +9,15 @@ process {
}
$count211 {
module = ['cellranger/2.1.1']
- memory = '120GB'
+ queue = '128GB,256GB,256GBv1,384GB'
}
$count301 {
module = ['cellranger/3.0.1']
- memory = '120GB'
+ queue = '128GB,256GB,256GBv1,384GB'
}
$count302 {
module = ['cellranger/3.0.2']
- memory = '120GB'
+ queue = '128GB,256GB,256GBv1,384GB'
}
}
--
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