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BICF
Astrocyte
cellranger_count
Commits
1b7e4147
Commit
1b7e4147
authored
Aug 04, 2020
by
Gervaise Henry
🤠
Browse files
Indevidualize module/container unit test run names
parent
8e7ac5e9
Pipeline
#7796
failed with stages
in 8 seconds
Changes
1
Pipelines
1
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.gitlab-ci.yml
View file @
1b7e4147
...
...
@@ -46,7 +46,7 @@ module_2.1.1_test:
-
tags
script
:
-
module load cellranger/2.1.1
-
cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
cellranger count --id=
module_2.1.1
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -69,7 +69,7 @@ module_3.0.2_test:
-
tags
script
:
-
module load cellranger/3.0.2
-
cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
cellranger count --id=
module_3.0.2
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -92,7 +92,7 @@ module_3.1.0_test:
-
tags
script
:
-
module load cellranger/3.1.0
-
cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
cellranger count --id=
module_3.1.0
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -117,7 +117,7 @@ module_4.0.0_test:
-
tags
script
:
-
module load cellranger/4.0.0
-
cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
cellranger count --id=
module_4.0.0
--transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -141,7 +141,7 @@ container_2.1.1_test:
-
master
-
tags
script
:
-
singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
singularity run 'docker://bicf/cellranger2.1.1:2.0.0' cellranger count --id=
container_2.1.1
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -163,7 +163,7 @@ container_3.0.2_test:
-
master
-
tags
script
:
-
singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
singularity run 'docker://bicf/cellranger3.0.2:2.0.0' cellranger count --id=
container_3.0.2
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -185,7 +185,7 @@ container_3.1.0_test:
-
master
-
tags
script
:
-
singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
singularity run 'docker://bicf/cellranger3.1.0:2.0.0' cellranger count --id=
container_3.1.0
--transcriptome=/project/apps_database/cellranger/refdata-cellranger-GRCh38-3.0.0 --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
@@ -209,7 +209,7 @@ container_4.0.0_test:
-
master
-
tags
script
:
-
singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=
test
--transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
-
singularity run 'docker://bicf/cellranger4.0.0:2.0.0_indev' cellranger count --id=
container_4.0.0
--transcriptome=/project/apps_database/cellranger/refdata-gex-GRCh38-2020-A --fastqs=./test_data/hu.v2s1r500 --sample=pbmc_1k_v2 --chemistry=SC3Pv2
artifacts
:
name
:
"
$CI_JOB_NAME"
when
:
always
...
...
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