diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index b33b296a2f4f8e6abfe28a188c6fb662e63a33b5..c0a034f47ba910842e376b3a85866a60ee0af967 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -40,7 +40,7 @@ simple_1:
       - develop
       - master
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc_cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s1r500/*.fastq.gz" --designFile "test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '3GEXv3' --version '3.1.0'
   - pytest -m count310
   artifacts:
     name: "$CI_JOB_NAME"
@@ -65,7 +65,7 @@ simple_2:
       - master
       - tags
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc_cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s1r500/*.fastq.gz" --designFile "test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion '3GEXv3' --version '3.1.0'
   - pytest -m count310
   artifacts:
     name: "$CI_JOB_NAME"
@@ -89,7 +89,7 @@ detailed_1:
     refs:
       - tags
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc,_cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0'
   - pytest -m count310
   artifacts:
     name: "$CI_JOB_NAME"
@@ -114,7 +114,7 @@ detailed_2:
     refs:
       - tags
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc_cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v3s2r10k/*.fastq.gz" --designFile "test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
   - pytest -m count302
   artifacts:
     name: "$CI_JOB_NAME"
@@ -138,7 +138,7 @@ detailed_3:
     refs:
       - tags
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc_cluster --fastq "test_data/mu.v3s2r10k/*.fastq.gz" --designFile "test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/mu.v3s2r10k/*.fastq.gz" --designFile "test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
   - pytest -m count301
   artifacts:
     name: "$CI_JOB_NAME"
@@ -162,7 +162,7 @@ detailed_4:
     refs:
       - tags
   script:
-  - nextflow -q run workflow/main.nf -profile biohpc_cluster --fastq "test_data/hu.v2s2r10k/*.fastq.gz" --designFile "test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
+  - nextflow -q run workflow/main.nf -profile biohpc,cluster --fastq "test_data/hu.v2s2r10k/*.fastq.gz" --designFile "test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
   - pytest -m count211
   artifacts:
     name: "$CI_JOB_NAME"
diff --git a/workflow/conf/biohpc_local.config b/workflow/conf/biohpc.config
old mode 100755
new mode 100644
similarity index 71%
rename from workflow/conf/biohpc_local.config
rename to workflow/conf/biohpc.config
index 182f03b223088dc703b882a561049ac1b3e4194b..73042192e0ecd639910316421a8a2e198f5ff7cd
--- a/workflow/conf/biohpc_local.config
+++ b/workflow/conf/biohpc.config
@@ -1,29 +1,3 @@
-process {
-  executor = 'local'
-
-  withLabel: checkDesignFile {
-    module = ['python/3.6.1-2-anaconda']
-  }
-  withLabel: count211 {
-    module = ['cellranger/2.1.1']
-  }
-  withLabel: count301 {
-    module = ['cellranger/3.0.1']
-  }
-  withLabel: count302 {
-    module = ['cellranger/3.0.2']
-  }
-  withLabel: count310 {
-    module = ['cellranger/3.1.0']
-  }
-  withLabel: versions {
-    module = ['python/3.6.1-2-anaconda','pandoc/2.7','multiqc/1.7']
-  }
-  withLabel: multiqc {
-    module = ['multiqc/1.7']
-  }
-}
-
 params {
   // Reference file paths on BioHPC
   genomes {
diff --git a/workflow/conf/biohpc_cluster.config b/workflow/conf/biohpc_cluster.config
deleted file mode 100644
index d6c70870870bb37af1246d39d0456efe54f07ed0..0000000000000000000000000000000000000000
--- a/workflow/conf/biohpc_cluster.config
+++ /dev/null
@@ -1,88 +0,0 @@
-process {
-  executor = 'slurm'
-  queue = '32GB'
-  clusterOptions = '--hold'
-
-  withLabel: checkDesignFile {
-    module = ['python/3.6.1-2-anaconda']
-    queue = '32GB'
-  }
-  withLabel: count211 {
-    module = ['cellranger/2.1.1']
-    queue = '128GB,256GB,256GBv1,384GB'
-  }
-  withLabel: count301 {
-    module = ['cellranger/3.0.1']
-    queue = '128GB,256GB,256GBv1,384GB'
-  }
-  withLabel: count302 {
-    module = ['cellranger/3.0.2']
-    queue = '128GB,256GB,256GBv1,384GB'
-  }
-  withLabel: count310 {
-    module = ['cellranger/3.1.0']
-    queue = '128GB,256GB,256GBv1,384GB'
-  }
-  withLabel: versions {
-    module = ['python/3.6.1-2-anaconda','pandoc/2.7','multiqc/1.7']
-    queue = '32GB'
-  }
-  withLabel: multiqc {
-    module = ['multiqc/1.7']
-    queue = '32GB'
-  }
-}
-
-params {
-  // Reference file paths on BioHPC
-  genomes {
-    'GRCh38-3.0.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'GRCh38-1.2.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'hg19-3.0.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'hg19-1.2.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'mm10-3.0.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'mm10-1.2.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'GRCh38_and_mm10-3.1.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'hg19_and_mm10-3.0.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'hg19_and_mm10-1.2.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-    'ercc92-1.2.0' {
-      loc = '/project/apps_database/cellranger/refdata-cellranger-'
-    }
-  }
-  // Chemistry mapping parameter
-  chemistry {
-    'auto' {
-      param = 'auto'
-    }
-    '3GEXv1' {
-      param = 'SC3Pv1'
-    }
-   '3GEXv2' {
-      param = 'SC3Pv2'
-    }
-   '3GEXv3' {
-      param = 'SC3Pv3'
-    }
-   '5GEX' {
-      param = 'fiveprime'
-    }
-  }
-}
diff --git a/workflow/conf/cluster.config b/workflow/conf/cluster.config
new file mode 100644
index 0000000000000000000000000000000000000000..2526210647cbbc6bf1ccb4dfb6757e55320b97d0
--- /dev/null
+++ b/workflow/conf/cluster.config
@@ -0,0 +1,31 @@
+process {
+  executor = 'slurm'
+  queue = '32GB'
+  clusterOptions = '--hold'
+
+  withLabel: checkDesignFile {
+    module = ['python/3.6.1-2-anaconda']
+  }
+  withLabel: count211 {
+    module = ['cellranger/2.1.1']
+    queue = '128GB,256GB,256GBv1,384GB'
+  }
+  withLabel: count301 {
+    module = ['cellranger/3.0.1']
+    queue = '128GB,256GB,256GBv1,384GB'
+  }
+  withLabel: count302 {
+    module = ['cellranger/3.0.2']
+    queue = '128GB,256GB,256GBv1,384GB'
+  }
+  withLabel: count310 {
+    module = ['cellranger/3.1.0']
+    queue = '128GB,256GB,256GBv1,384GB'
+  }
+  withLabel: versions {
+    module = ['python/3.6.1-2-anaconda','pandoc/2.7','multiqc/1.7']
+  }
+  withLabel: multiqc {
+    module = ['multiqc/1.7']
+  }
+}
diff --git a/workflow/conf/local.config b/workflow/conf/local.config
new file mode 100755
index 0000000000000000000000000000000000000000..556476fe2256d196b301a6324ce7b6ab22725dea
--- /dev/null
+++ b/workflow/conf/local.config
@@ -0,0 +1,25 @@
+process {
+  executor = 'local'
+
+  withLabel: checkDesignFile {
+    module = ['python/3.6.1-2-anaconda']
+  }
+  withLabel: count211 {
+    module = ['cellranger/2.1.1']
+  }
+  withLabel: count301 {
+    module = ['cellranger/3.0.1']
+  }
+  withLabel: count302 {
+    module = ['cellranger/3.0.2']
+  }
+  withLabel: count310 {
+    module = ['cellranger/3.1.0']
+  }
+  withLabel: versions {
+    module = ['python/3.6.1-2-anaconda','pandoc/2.7','multiqc/1.7']
+  }
+  withLabel: multiqc {
+    module = ['multiqc/1.7']
+  }
+}
diff --git a/workflow/nextflow.config b/workflow/nextflow.config
index 527b3ca62cada28034d668dc1aba67936a137bd3..1cfa59d2b5ac321f6af1d87fab074b3e82eaa981 100644
--- a/workflow/nextflow.config
+++ b/workflow/nextflow.config
@@ -1,9 +1,12 @@
 profiles {
-  biohpc_local {
-    includeConfig 'conf/biohpc_local.config'
+  biohpc {
+    includeConfig 'conf/biohpc.config'
   }
-  biohpc_cluster {
-    includeConfig 'conf/biohpc_cluster.config'
+  local {
+    includeConfig 'conf/local.config'
+  }
+  cluster {
+    includeConfig 'conf/cluster.config'
   }
   aws {
     includeConfig 'conf/aws.config'