From 110bab86c9bc126812b8c44a3a86e41832be726e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 11 Mar 2019 18:18:57 -0500
Subject: [PATCH] Add astrocyte check

---
 .gitlab-ci.yml | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c269f6d..a42a1ac 100755
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,4 +1,5 @@
 before_script:
+  - module load astrocyte
   - module load python/3.6.1-2-anaconda
   - module load nextflow/0.31.1_Ignite
   - mkdir test_data/v2s2r100k
@@ -7,8 +8,14 @@ before_script:
   - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/v3s2r100k/* test_data/v3s2r100k/
 
 stages:
+  - astrocyte
   - integration
 
+astrocyte_check:
+  stage: astrocyte
+  script:
+  - astrocyte_cli check ../cellranger_count
+
 simple_cr2v2ref1.2.0:
   stage: integration
   script:
-- 
GitLab