CHANGELOG.md 1.88 KB
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# v3.0.0
**User Facing**
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* Add 5GEX-PE, 5GEX-R2, threeprime as library options
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**Background**

*Known Bugs*
* Vizapp does not yet work for Astrocyte
* Running in CLI: to set --fastq path of file/s needs to be in quotes
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* 2020-A references don't work with with cellranger versions < 4.0.0 (bug)
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# v2.2.0
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**User Facing**
* Add cellranger version 4.0.0
* Add references version 2020-A (GRCh38, mm10, mix)
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* Create option to create files for downstream viz and analysis (Seurat R-object)
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**Background**

*Known Bugs*
* Vizapp does not yet work for Astrocyte
* Running in CLI: to set --fastq path of file/s needs to be in quotes

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# v2.1.1
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**User Facing**
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* Check Design File for spaces in name and file contents
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* Attempt to prevent thredding error (which appears to only happen on 256GBv1 nodes)
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* Add option for 5' GEX chemistry
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* Remove cellranger 3.0.1 as an option
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* Fix CLI MultiQC failure bug
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**Background**
* Add Nextflow Tower integration into CI (GHH's profile)
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* Add new layered config folders, including prepare for awsifying
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* Update param to new standard
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* Update CI
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* Add pipeline tracking tool
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*Known Bugs*
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* Vizapp does not yet work for Astrocyte
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* Running in CLI: to set --fastq path of file/s needs to be in quotes
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# v1.2.0
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**User Facing**
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* Add Cellranger Version 3.1.0
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* Add human/mouse farmyard reference Version 3.1.0 from 10x
* Add Vizapp (shiny)
* Fix mutiqc error
* Add MIT License
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**Background**
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* Add CI Artifacts
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*Known Bugs*
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* Vizapp does not yet work for Astrocyte
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# v1.1.0
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**User Facing**
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* Make report (multiqc) for cellranger qc output, version, references
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**Background**
* Add changelog
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* Add check for space in genomeLocationFull (cellranger cannot handle) in bash script
* Move module loads to process setup level code
* Add Jeremy Mathews to author list
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* Apply style guide
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* Add pytests for ouptuts
* Test for incompatible params (kitVersion=3 AND version=2.1.1)
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*Known Bugs*