Tags give the ability to mark specific points in history as being important
  • publish_1.0.0   Version used for initial ATAC-seq for UTSW.
    d1b33e15 · rename tests. ·
    Release publish_1.0.0

    Initial release

  • publish_2.0.3
    1d36bc4d · fix file path. ·
    Release publish_2.0.3

    V2.0.3

    Fixed

    • Removed biosample, factor, treatment from design file
    • Updated documentation
    • Output graphics are in pdf format
    • Not optional to remove chrM while converting to tagAlign
    • Not optional to do a tn5 shift on tagAlign files

    Added

    • Changelog
    • Merge request template
    • Added new CI/CD tests for better coverage
    • Added punctuation check in design file
    • Added sequence (fastq1) length into design file for better mapping
    • Raw fastq1 sequence length determines mapper
    • Added paired-end peak calling
    • multiQC report
    • Added percentage of reads in mitochondria (unfiltered and dedup)
    • Added FRiP score (per sample: reads in replicated peaks/total reads per)
    • Added TSS enrichment
    • Added Fragment/Insert Length size
    • Removal of blacklist regions
    • Annotate peaks after removing non-chromosomes
  • publish_2.0.4   v2.0.4
    Release publish_2.0.4

    Upgraded

    • Updated support for astrocyte 0.3.1
    • Added queue information to fix memory issue