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atacseq_analysis
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  • atacseq_analysis
  • Issues

  • Open 7
  • Closed 36
  • All 43
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual Weight Blocking
  • map_reads failure case
    #1 · opened Apr 12, 2018 by Spencer Barnes   Version 2.1.0   bug
    • 0
    updated Jun 23, 2020
  • deeptools version 3 error
    #2 · opened May 11, 2018 by Spencer Barnes   Version 2.0   enhancment
    • CLOSED
    • 1
    updated Jan 02, 2020
  • mitochondrial chromosome reads
    #3 · opened May 11, 2018 by Spencer Barnes   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • pool and pseudoreplicate
    #4 · opened May 11, 2018 by Spencer Barnes   Version 2.0   critical
    • CLOSED
    • 1
    updated Jan 02, 2020
  • Re-direct output
    #5 · opened Feb 20, 2019 by Holly Ruess   Version 2.0   critical
    • CLOSED
    • 0
    updated Jan 02, 2020
  • Trimming Comparison
    #6 · opened Apr 25, 2019 by Jonathan Gesell   Optimizations
    • 0
    updated Dec 29, 2020
  • Shift is incorrect for ATAC-seq
    #7 · opened May 02, 2019 by Venkat Malladi   Version 2.0   bug
    • CLOSED
    • 1
    updated Jan 06, 2020
  • Make ATAC-seq pipeline generalizibe for Open Chromatin
    #8 · opened May 02, 2019 by Venkat Malladi   Version 1.0   enhancment
    • CLOSED
    • 1
    updated Dec 03, 2019
  • Add in references and version used in script
    #9 · opened May 02, 2019 by Venkat Malladi   Version 2.0   critical
    • CLOSED
    • 1
    updated May 28, 2020
  • Update script to incorrpoarte chagnes from ChiP_seq pipeline
    #10 · opened May 02, 2019 by Venkat Malladi   Version 1.0   critical
    • CLOSED
    • 1
    updated Dec 03, 2019
  • Change output from png to pdf
    #11 · opened May 10, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 0
    updated Jan 02, 2020
  • Remove unnecessary columns from design file
    #12 · opened Dec 03, 2019 by Holly Ruess   Version 2.0
    • CLOSED
    • 2
    • 0
    updated Dec 04, 2019
  • update check design file
    #13 · opened Dec 06, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Dec 09, 2019
  • Fix Trim Reads
    #14 · opened Dec 09, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 4
    • 0
    updated Dec 11, 2019
  • Fix Filter Reads
    #15 · opened Dec 12, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Dec 18, 2019
  • Fix Align Reads
    #16 · opened Dec 12, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Dec 16, 2019
  • Fix Experiment QC
    #17 · opened Dec 18, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Dec 20, 2019
  • Fix Convert Reads
    #18 · opened Dec 18, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Dec 27, 2019
  • Fix cross correlation
    #19 · opened Dec 19, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jan 03, 2020
  • Fix Pool and Pseudoreps
    #20 · opened Dec 20, 2019 by Holly Ruess   Version 2.0   enhancment
    • CLOSED
    • 1
    • 0
    updated Jan 03, 2020
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