Issues · BICF / Astrocyte / atacseq_analysis

New issue

deeptools version 3 error

#2 · created May 11, 2018 by Spencer Barnes Version 2.0 enhancment
- CLOSED
- 1
updated Jan 02, 2020
mitochondrial chromosome reads

#3 · created May 11, 2018 by Spencer Barnes Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020
pool and pseudoreplicate

#4 · created May 11, 2018 by Spencer Barnes Version 2.0 critical
- CLOSED
- 1
updated Jan 02, 2020
Re-direct output

#5 · created Feb 20, 2019 by Holly Ruess Version 2.0 critical
- CLOSED
- 0
updated Jan 02, 2020
Shift is incorrect for ATAC-seq

#7 · created May 02, 2019 by Venkat Malladi Version 2.0 bug
- CLOSED
- 1
updated Jan 06, 2020
Add in references and version used in script

#9 · created May 02, 2019 by Venkat Malladi Version 2.0 critical
- CLOSED
- 1
updated May 28, 2020
Change output from png to pdf

#11 · created May 10, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 02, 2020
Remove unnecessary columns from design file

#12 · created Dec 03, 2019 by Holly Ruess Version 2.0
- CLOSED
- 2
- 0
updated Dec 04, 2019
update check design file

#13 · created Dec 06, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 09, 2019
Fix Trim Reads

#14 · created Dec 09, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 4
- 0
updated Dec 11, 2019
Fix Filter Reads

#15 · created Dec 12, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 18, 2019
Fix Align Reads

#16 · created Dec 12, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 16, 2019
Fix Experiment QC

#17 · created Dec 18, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 20, 2019
Fix Convert Reads

#18 · created Dec 18, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Dec 27, 2019
Fix cross correlation

#19 · created Dec 19, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 03, 2020
Fix Pool and Pseudoreps

#20 · created Dec 20, 2019 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 03, 2020
Make hg19 test

#22 · created Jan 01, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 0
updated Jan 06, 2020
Fix call peaks MACs

#23 · created Jan 02, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
updated Jan 07, 2020
fix consensus peaks

#24 · created Jan 03, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 07, 2020
Fix BioHPC config

#25 · created Jan 06, 2020 by Holly Ruess Version 2.0 enhancment
- CLOSED
- 1
- 0
updated Jan 07, 2020