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  • BICF
  • Astrocyte
  • atacseq_analysis
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  • #25

Closed
Open
Created Jan 06, 2020 by Holly Ruess@s185797Maintainer

Fix BioHPC config

WARN: The config file defines settings for an unknown process: tssEnrich WARN: Process configuration syntax $processName has been deprecated -- Replace process.$checkDesignFile = <value> with a process selector [warm up] executor > local WARN: Process configuration syntax $processName has been deprecated -- Replace process.$trimReads = <value> with a process selector [warm up] executor > slurm WARN: Process configuration syntax $processName has been deprecated -- Replace process.$alignReads = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$filterReads = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$experimentQC = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$convertReads = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$crossReads = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$defineExpDesignFiles = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$poolAndPsuedoReads = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$callPeaksMACS = <value> with a process selector WARN: Process configuration syntax $processName has been deprecated -- Replace process.$consensusPeaks = <value> with a process selector

Also remove GRCh37

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