diff --git a/workflow/main.nf b/workflow/main.nf
index fecc341f1170d17c34a93fc33aab03b7f32b75a9..869063614555bf520a03b4227d96d275bc930188 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -157,8 +157,6 @@ process filterReads {
   file '*pbc.qc' into dedupReadsComplexity
   file '*dup.qc' into dupReads
 
-  beforeScript """python3 $baseDir/process_scripts/setup.py install --user"""
-
   script:
 
   if (pairedEnd) {