diff --git a/workflow/main.nf b/workflow/main.nf index 670ba7f0636f9f5d1ac34e47c507813ce05e6d1e..04866eb3929d46658f50af560b3c7c1ae9cbe812 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -86,11 +86,11 @@ process trimReads { input: - set sampleId, reads, experimentId, biosample, factor, treatment, replicate, controlId from rawReads + set sampleId, reads, experimentId, biosample, factor, treatment, replicate from rawReads output: - set sampleId, file('*.fq.gz'), experimentId, biosample, factor, treatment, replicate, controlId into trimmedReads + set sampleId, file('*.fq.gz'), experimentId, biosample, factor, treatment, replicate into trimmedReads file('*trimming_report.txt') into trimgalore_results script: