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atacseq_analysis
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BICF
Astrocyte
atacseq_analysis
Commits
c018fbb5
Commit
c018fbb5
authored
Jun 10, 2020
by
Holly Ruess
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fix errors
parent
405b2045
Pipeline
#7131
passed with stages
in 417 minutes and 22 seconds
Changes
2
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1
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4 deletions
+3
-4
workflow/main.nf
workflow/main.nf
+2
-3
workflow/tests/test_experiment_qc.py
workflow/tests/test_experiment_qc.py
+1
-1
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workflow/main.nf
View file @
c018fbb5
...
...
@@ -507,9 +507,8 @@ process consensusPeaks {
file preDiffDesign
output:
file '*.replicated.*' into consensusPeaks
file '*.rejected.*' into rejectedPeaks
file '*.replicated_noblacklist*' optional true into blPeaks
file '*replicated*' into consensusPeaks
file '*rejected*' into rejectedPeaks
file("design_exQC.tsv") into designExperimentQC
file('version_*.txt') into consensusPeaksVersions
file("design_annotatePeaks.tsv") into designAnnotatePeaks
...
...
workflow/tests/test_experiment_qc.py
View file @
c018fbb5
...
...
@@ -56,7 +56,7 @@ def test_coverage_pairedend_mouse():
def
test_FRiP_pairedend_mouse
():
FRiPscore
=
test_output_path
+
'ENCLB122XDP.FRiPscore.tsv'
df_FRiPscore
=
pd
.
read_csv
(
FRiPscore
,
sep
=
'
\t
'
)
assert
round
(
df_FRiPscore
[
"FRiP_score"
].
iloc
[
0
],
6
)
==
0.2
67798
assert
round
(
df_FRiPscore
[
"FRiP_score"
].
iloc
[
0
],
6
)
==
0.2
56600
@
pytest
.
mark
.
pairedend_mouse
def
test_TSSenrich_pairedend_mouse
():
...
...
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