From ae021fd79830b56591cc44a474b3b60f7d318cb2 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 26 Jun 2018 14:35:23 -0500
Subject: [PATCH] Fix syntax.
---
workflow/scripts/convert_reads.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/scripts/convert_reads.py b/workflow/scripts/convert_reads.py
index dc3756a..e0630e5 100644
--- a/workflow/scripts/convert_reads.py
+++ b/workflow/scripts/convert_reads.py
@@ -42,12 +42,12 @@ def get_args():
parser.add_argument('-m', '--chrm',
help="True/False if to remove ChrM.",
- default=True,
+ default=False,
action='store_true')
parser.add_argument('-t', '--tn5',
- help='Enable TN5 shifting for ATAC-Seq.'
- default=True,
+ help='Enable TN5 shifting for ATAC-Seq.',
+ default=False,
action='store_true')
args = parser.parse_args()
--
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