From a7c125613a22e86206348e4e937422a5db190443 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 31 Jul 2018 15:08:39 -0500
Subject: [PATCH] Fix references to libraries.
---
workflow/tests/test_call_peaks_macs.py | 2 +-
workflow/tests/test_experiment_design.py | 2 +-
workflow/tests/test_experiment_qc.py | 2 +-
workflow/tests/test_overlap_peaks.py | 4 ++--
workflow/tests/test_pool_and_psuedoreplicate.py | 2 +-
5 files changed, 6 insertions(+), 6 deletions(-)
diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py
index f575681..2f40429 100644
--- a/workflow/tests/test_call_peaks_macs.py
+++ b/workflow/tests/test_call_peaks_macs.py
@@ -2,7 +2,7 @@
import pytest
import os
-from python_utils import utils
+import utils
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/callPeaksMACS/'
diff --git a/workflow/tests/test_experiment_design.py b/workflow/tests/test_experiment_design.py
index efdbb7d..0cbd3e6 100644
--- a/workflow/tests/test_experiment_design.py
+++ b/workflow/tests/test_experiment_design.py
@@ -3,7 +3,7 @@
import pytest
import pandas as pd
from io import StringIO
-from design_file import experiment_design
+import experiment_design
import os
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
diff --git a/workflow/tests/test_experiment_qc.py b/workflow/tests/test_experiment_qc.py
index 51f4a90..026e6ab 100644
--- a/workflow/tests/test_experiment_qc.py
+++ b/workflow/tests/test_experiment_qc.py
@@ -4,7 +4,7 @@ import pytest
import os
import pandas as pd
from io import StringIO
-from quality_metrics import experiment_qc
+import experiment_qc
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/experimentQC/'
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index 6166232..3928e64 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -4,8 +4,8 @@ import pytest
import pandas as pd
from io import StringIO
import os
-from python_utils import utils
-from call_peaks import overlap_peaks
+import utils
+import overlap_peaks
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/consensusPeaks/'
diff --git a/workflow/tests/test_pool_and_psuedoreplicate.py b/workflow/tests/test_pool_and_psuedoreplicate.py
index 13bdf1f..9e8cb57 100644
--- a/workflow/tests/test_pool_and_psuedoreplicate.py
+++ b/workflow/tests/test_pool_and_psuedoreplicate.py
@@ -4,7 +4,7 @@ import pytest
import pandas as pd
from io import StringIO
import os
-from call_peaks import pool_and_psuedoreplicate
+import pool_and_psuedoreplicate
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/design/'
--
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