diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py index f575681405752e8adc0cb2f517380ed3fa08268f..2f40429d4c3dfb7d14f12d25fb7cafe09188fdb5 100644 --- a/workflow/tests/test_call_peaks_macs.py +++ b/workflow/tests/test_call_peaks_macs.py @@ -2,7 +2,7 @@ import pytest import os -from python_utils import utils +import utils test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/callPeaksMACS/' diff --git a/workflow/tests/test_experiment_design.py b/workflow/tests/test_experiment_design.py index efdbb7d9a4c2f9ab6932f7bc4459f29930cd3f98..0cbd3e65e8e60f8646d47fc622b647d217df8b9d 100644 --- a/workflow/tests/test_experiment_design.py +++ b/workflow/tests/test_experiment_design.py @@ -3,7 +3,7 @@ import pytest import pandas as pd from io import StringIO -from design_file import experiment_design +import experiment_design import os test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ diff --git a/workflow/tests/test_experiment_qc.py b/workflow/tests/test_experiment_qc.py index 51f4a903730e3b3602f09303e2f06ad2b0d25d8f..026e6ab437573ab646efff5351ec13ad146a30a1 100644 --- a/workflow/tests/test_experiment_qc.py +++ b/workflow/tests/test_experiment_qc.py @@ -4,7 +4,7 @@ import pytest import os import pandas as pd from io import StringIO -from quality_metrics import experiment_qc +import experiment_qc test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/experimentQC/' diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py index 616623241037016e970ab429966b6570634c23d1..3928e647351e046ae073629ef15cc76d8e36bbda 100644 --- a/workflow/tests/test_overlap_peaks.py +++ b/workflow/tests/test_overlap_peaks.py @@ -4,8 +4,8 @@ import pytest import pandas as pd from io import StringIO import os -from python_utils import utils -from call_peaks import overlap_peaks +import utils +import overlap_peaks test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/consensusPeaks/' diff --git a/workflow/tests/test_pool_and_psuedoreplicate.py b/workflow/tests/test_pool_and_psuedoreplicate.py index 13bdf1f9c703ce36e1fe40e61c38c7a8c3e8a169..9e8cb57ba12d272af8df167bb44ddb400de59e2c 100644 --- a/workflow/tests/test_pool_and_psuedoreplicate.py +++ b/workflow/tests/test_pool_and_psuedoreplicate.py @@ -4,7 +4,7 @@ import pytest import pandas as pd from io import StringIO import os -from call_peaks import pool_and_psuedoreplicate +import pool_and_psuedoreplicate test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/design/'