From 900be29ede4d81954185f8e20597b9f4fdf61e85 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 26 Jun 2018 15:46:46 -0500
Subject: [PATCH] Fix call.
---
workflow/scripts/convert_reads.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/convert_reads.py b/workflow/scripts/convert_reads.py
index e0630e5..c3268da 100644
--- a/workflow/scripts/convert_reads.py
+++ b/workflow/scripts/convert_reads.py
@@ -159,9 +159,9 @@ def main():
if paired: # paired-end data
- convert_mapped_pe(bam, bam_basename)
+ convert_mapped_pe(bam, bam_basename, tag_filename, chrm)
else:
- convert_mapped(bam, tag_filename)
+ convert_mapped(bam, tag_filename, chrm)
if tn5:
logger.info("TN5-shifting TAGALIGN...")
--
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