From 0bca3724f218df26a9b0ec9e9ba5e0960320808c Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 25 Jun 2018 15:51:24 -0500
Subject: [PATCH] Fix sregistry.
---
workflow/conf/biohpc.config | 2 +-
workflow/main.nf | 3 ++-
2 files changed, 3 insertions(+), 2 deletions(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index df20dd9..79b002f 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -29,7 +29,7 @@ process {
}
$tssEnrich
{
- module = ['singularity/2.4.2-utsw-2018010']
+ module = ['singularity/2.4.2-utsw-2018010', 'sregistry/1.0.1-biohpc']
cpus = 32
}
$crossReads {
diff --git a/workflow/main.nf b/workflow/main.nf
index 5ce28f7..3d2c720 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -250,7 +250,8 @@ process tssEnrich {
script:
"""
- singularity run metaseq.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes
+ sregistry pull bicf/metaseq:0.1.0
+ singularity run $HOME/.singularity/shub/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes
"""
}
--
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