diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config index df20dd99645cfcea7c380b2612aede28e2bae80f..79b002ff92275055941dc8f9365f775900e351aa 100644 --- a/workflow/conf/biohpc.config +++ b/workflow/conf/biohpc.config @@ -29,7 +29,7 @@ process { } $tssEnrich { - module = ['singularity/2.4.2-utsw-2018010'] + module = ['singularity/2.4.2-utsw-2018010', 'sregistry/1.0.1-biohpc'] cpus = 32 } $crossReads { diff --git a/workflow/main.nf b/workflow/main.nf index 5ce28f77a699d3c5bda853e5aa5848285b0b2451..3d2c720fef626394421129b7bd464159e4d342b2 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -250,7 +250,8 @@ process tssEnrich { script: """ - singularity run metaseq.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes + sregistry pull bicf/metaseq:0.1.0 + singularity run $HOME/.singularity/shub/bicf-metaseq:0.1.0.simg $baseDir/scripts/atac_qc.py -b $deduped -p $sampleId -t $tssFile -c $chromSizes """ }